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سفارش

Prize-winning spinoffs

doi : 10.1038/s41587-023-01882-w

Volume 41 Issue 7, July 2023

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‘Clicked’ drugs: researchers prove the remarkable chemistry in humans

Mark Peplow 

doi : 10.1038/s41587-023-01860-2

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Unprecedented blood biomarker enables ALS drug approval

Cormac Sheridan 

doi : 10.1038/s41587-023-01862-0

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Biotech patenting � 2022

Kathryn Paisner & Laura DeFrancescoÂ

doi : 10.1038/s41587-023-01853-1

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Plant molecular farming in the wake of the closure of Medicago Inc

Eugenio Benvenuto, Inge Broer, Marc-André D’Aoust, Inga Hitzeroth, Penny Hundleby, Rima Menassa, Kirsi-Marja Oksman-Caldentey, Hadrien Peyret, Sancha Salgueiro, Pooja Saxena, Jennifer Stander, Heribert Warzecha & Julian MaÂ

doi : 10.1038/s41587-023-01812-w

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A call for an ‘Asilomar’ for cultivated meat and seafood

Sveva Bottini, Claudia Fuoco, Nike Schiavo, Alessandro Bertero, Stefano Biressi, Luciano Conti & Cesare GargioliÂ

doi : 10.1038/s41587-023-01849-x

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Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification

Evelien M. Adriaenssens, Simon Roux, J. Rodney Brister, Ilene Karsch-Mizrachi, Jens H. Kuhn, Arvind Varsani, Tong Yigang, Alejandro Reyes, Cédric Lood, Elliot J. Lefkowitz, Matthew B. Sullivan, Robert A. Edwards, Peter Simmonds, Luisa Rubino, Sead Sabanadzovic, Mart Krupovic & Bas E. DutilhÂ

doi : 10.1038/s41587-023-01844-2

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The prevalence of drug patent term extensions in the United States, 2000–2018

Victor L. Van de Wiele, Aaron S. Kesselheim, Sarosh Nagar & S. Sean TuÂ

doi : 10.1038/s41587-023-01847-z

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Transplanting soil microbial communities improves climate tolerance in trees

Julie N. ChuongÂ

doi : 10.1038/s41587-023-01874-w

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Fluorescence microscopy resolution increases to near-atomic level

Julie N. ChuongÂ

doi : 10.1038/s41587-023-01875-9

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Multiplex-GAM detects complex chromatin interactions

Julie N. ChuongÂ

doi : 10.1038/s41587-023-01876-8

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CRISPR-edited plants by grafting

Jiacheng Hu & Caixia GaoÂ

doi : 10.1038/s41587-022-01516-7

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Staple crops equipped for alkaline soils

Caitlin S. Byrt, A. Harvey Millar & Rana MunnsÂ

doi : 10.1038/s41587-023-01832-6

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Real-time monitoring of tumor-homing bacteria and tumor cells in vivo using ultrasound

doi : 10.1038/s41587-022-01590-x

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Accurate isoform discovery with IsoQuant using long reads

Andrey D. Prjibelski, Alla Mikheenko, Anoushka Joglekar, Alexander Smetanin, Julien Jarroux, Alla L. Lapidus & Hagen U. TilgnerÂ

doi : 10.1038/s41587-022-01565-y

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Genomically mined acoustic reporter genes for real-time in vivo monitoring of tumors and tumor-homing bacteria

Robert C. Hurt, Marjorie T. Buss, Mengtong Duan, Katie Wong, Mei Yi You, Daniel P. Sawyer, Margaret B. Swift, PrzemysÅ‚aw Dutka, Pierina Barturen-Larrea, David R. Mittelstein, Zhiyang Jin, Mohamad H. Abedi, Arash Farhadi, Ramya Deshpande & Mikhail G. ShapiroÂ

doi : 10.1038/s41587-022-01581-y

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Facile repurposing of peptide–MHC-restricted antibodies for cancer immunotherapy

Xinbo Yang, Daisuke Nishimiya, Sara Löchte, Kevin M. Jude, Marta Borowska, Christina S. Savvides, Michael Dougan, Leon Su, Xiang Zhao, Jacob Piehler & K. Christopher GarciaÂ

doi : 10.1038/s41587-022-01567-w

Monoclonal antibodies (Abs) that recognize major histocompatability complex (MHC)-presented tumor antigens in a manner similar to T cell receptors (TCRs) have great potential as cancer immunotherapeutics. However, isolation of ‘TCR-mimic’ (TCRm) Abs is laborious because Abs have not evolved the structurally nuanced peptide–MHC restriction of αβ-TCRs.

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A genetically encoded sensor measures temporal oxytocin release from different neuronal compartments

Tongrui Qian, Huan Wang, Peng Wang, Lan Geng, Long Mei, Takuya Osakada, Lei Wang, Yan Tang, Alan Kania, Valery Grinevich, Ron Stoop, Dayu Lin, Minmin Luo & Yulong LiÂ

doi : 10.1038/s41587-022-01561-2

Oxytocin (OT), a peptide hormone and neuromodulator, is involved in diverse physiological and pathophysiological processes in the central nervous system and the periphery. However, the regulation and functional sequences of spatial OT release in the brain remain poorly understood.

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Heritable transgene-free genome editing in plants by grafting of wild-type shoots to transgenic donor rootstocks

Lei Yang, Frank Machin, Shuangfeng Wang, Eleftheria Saplaoura & Friedrich KraglerÂ

doi : 10.1038/s41587-022-01585-8

Generation of stable gene-edited plant lines using clustered regularly interspaced short palindromic repeats (CRISPR)–CRISPR-associated protein 9 (Cas9) requires a lengthy process of outcrossing to eliminate CRISPR–Cas9-associated sequences and produce transgene-free lines.

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Precise cut-and-paste DNA insertion using engineered type V-K CRISPR-associated transposases

Connor J. Tou, Benno Orr & Benjamin P. KleinstiverÂ

doi : 10.1038/s41587-022-01574-x

CRISPR-associated transposases (CASTs) enable recombination-independent, multi-kilobase DNA insertions at RNA-programmed genomic locations. However, the utility of type V-K CASTs is hindered by high off-target integration and a transposition mechanism that results in a mixture of desired simple cargo insertions and undesired plasmid cointegrate products.

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High-throughput, targeted MHC class I immunopeptidomics using a functional genetics screening platform

Peter M. Bruno, Richard T. Timms, Nouran S. Abdelfattah, Yumei Leng, Felipe J. N. Lelis, Duane R. Wesemann, Xu G. Yu & Stephen J. ElledgeÂ

doi : 10.1038/s41587-022-01566-x

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Transcriptome-wide profiling and quantification of N6-methyladenosine by enzyme-assisted adenosine deamination

Yu-Lan Xiao, Shun Liu, Ruiqi Ge, Yuan Wu, Chuan He, Mengjie Chen & Weixin TangÂ

doi : 10.1038/s41587-022-01587-6

N6-methyladenosine (m6A), the most abundant internal messenger RNA modification in higher eukaryotes, serves myriad roles in regulating cellular processes. Functional dissection of m6A is, however, hampered in part by the lack of high-resolution and quantitative detection methods.

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A spatial genome aligner for resolving chromatin architectures from multiplexed DNA FISH

Bojing Blair Jia, Adam Jussila, Colin Kern, Quan Zhu & Bing RenÂ

doi : 10.1038/s41587-022-01568-9

Multiplexed fluorescence in situ hybridization (FISH) is a widely used approach for analyzing three-dimensional genome organization, but it is challenging to derive chromosomal conformations from noisy fluorescence signals, and tracing chromatin is not straightforward.

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Dynamic, adaptive sampling during nanopore sequencing using Bayesian experimental design

Lukas Weilguny, Nicola De Maio, Rory Munro, Charlotte Manser, Ewan Birney, Matthew Loose & Nick GoldmanÂ

doi : 10.1038/s41587-022-01580-z

Nanopore sequencers can select which DNA molecules to sequence, rejecting a molecule after analysis of a small initial part. Currently, selection is based on predetermined regions of interest that remain constant throughout an experiment.

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Author Correction: Discovery of drug–omics associations in type 2 diabetes with generative deep-learning models

Rosa Lundbye Allesøe, Agnete Troen Lundgaard, Ricardo Hernández Medina, Alejandro Aguayo-Orozco, Joachim Johansen, Jakob Nybo Nissen, Caroline Brorsson, Gianluca Mazzoni, Lili Niu, Jorge Hernansanz Biel, Cristina Leal Rodríguez, Valentas Brasas, Henry Webel, Michael Eriksen Benros, Anders Gorm Pedersen, Piotr Jaroslaw Chmura, Ulrik Plesner Jacobsen, Andrea Mari, Robert Koivula, Anubha Mahajan, Ana Vinuela, Juan Fernandez Tajes, Sapna Sharma, Mark Haid, Mun-Gwan Hong, Petra B. Musholt, Federico De Masi, Josef Vogt, Helle Krogh Pedersen, Valborg Gudmundsdottir, Angus Jones, Gwen Kennedy, Jimmy Bell, E. Louise Thomas, Gary Frost, Henrik Thomsen, Elizaveta Hansen, Tue Haldor Hansen, Henrik Vestergaard, Mirthe Muilwijk, Marieke T. Blom, Leen M. ‘t Hart, Francois Pattou, Violeta Raverdy, Soren Brage, Tarja Kokkola, Alison Heggie, Donna McEvoy, Miranda Mourby, Jane Kaye, Andrew Hattersley, Timothy McDonald, Martin Ridderstråle, Mark Walker, Ian Forgie, Giuseppe N. Giordano, Imre Pavo, Hartmut Ruetten, Oluf Pedersen, Torben Hansen, Emmanouil Dermitzakis, Paul W. Franks, Jochen M. Schwenk, Jerzy Adamski, Mark I. McCarthy, Ewan Pearson, Karina Banasik, Simon Rasmussen, Søren Brunak & IMI DIRECT Consortium

doi : 10.1038/s41587-023-01805-9

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Author Correction: A spatial genome aligner for resolving chromatin architectures from multiplexed DNA FISH

Bojing Blair Jia, Adam Jussila, Colin Kern, Quan Zhu & Bing RenÂ

doi : 10.1038/s41587-023-01673-3

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The need for need-finding in medical education

Sainiteesh Maddineni & Wasan KumarÂ

doi : 10.1038/s41587-023-01855-z

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Five questions with Sanja Vicković

Michael FranciscoÂ

doi : 10.1038/s41587-023-01856-y

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