Analyte | Analytical platforms | Differential diagnosis | Available second-tier test | Initial confirmatory testingΔ | Urgency of clinical follow-up◊ | ACT Sheet and ACMG algorithm links |
Core conditions* | Secondary conditions* | Other conditions¶ |
Amino acids |
Arginine (Arg) | MS/MS | N/A | | N/A | N/A | - Plasma amino acids
- Urine organic acids
- Urine orotic acid
| Next business day | |
Argininosuccinic acid (ASA) | MS/MS | - Argininosuccinate lyase deficiency§
| N/A | N/A | N/A | - Plasma amino acids
- Urine organic acids
- Urine orotic acid
| Immediately | |
Citrulline (Cit), elevated | MS/MS | - Citrullinemia type I (argininosuccinate synthetase deficiency)§
- Argininosuccinate lyase deficiency§
| - Citrullinemia type II (citrin deficiency)§
| - Pyruvate carboxylase deficiency
| N/A | - Plasma amino acids
- Urine organic acids
- Urine orotic acid
| Immediately | |
Citrulline (Cit), reduced | MS/MS | N/A | N/A | - Ornithine transcarbamylase deficiency
- Carbamoyl phosphate synthetase type I deficiency
- N-acetylglutamate synthetase deficiency
- MT-ATP6 related mitochondrial disease
| N/A | - Plasma amino acids
- Urine organic acids
- Urine orotic acid
- Plasma acylcarnitines
| Immediately | |
Glutamine/pyroglutamic acid (Gln/Pyrog) | MS/MS | N/A | - Citrullinemia type II (citrin deficiency)§
| - 5-oxoprolinase or glutathione synthetase deficiency
- Ornithine transcarbamylase deficiency
- Carbamoyl phosphate synthetase type I deficiency
| N/A | - Plasma amino acids
- Urine organic acids
- Urine orotic acid
| Next business day | |
Glycine (Gly) | MS/MS | N/A | N/A | - Nonketotic hyperglycinemia
| N/A | - Plasma amino acids
- Glycine in cerebrospinal fluid
| Next business day | N/A |
Leucine/isoleucine/OH proline (Xle), elevated | MS/MS | - Maple syrup urine disease§¥
| N/A | - Pyruvate dehydrogenase component E3 deficiency (dihydrolipoamide dehydrogenase deficiency)
- Hydroxyprolinemia (hydroxy-L-proline oxidase deficiency)
| | - Plasma amino acids
- Urine organic acids
| Immediately | |
Leucine/isoleucine/OH proline (Xle), reduced | MS/MS | N/A | N/A | - Branched-chain ketoacid dehydrogenase kinase deficiency¥
| N/A | | Next business day | N/A |
Lysine (Lys) | MS/MS | N/A | - 2;4-dienoyl-CoA reductase deficiency
| - Alpha-aminoadipic semialdehyde synthase deficiency
| N/A | - Plasma amino acids
- Plasma acylcarnitines
| Next business day | N/A |
Methionine (Met) | MS/MS | - Cystathionine beta-synthase deficiency
| - Methionine adenosyltransferase I/III, S-adenosylhomocysteine hydrolase, and glycine N-methyltransferase deficiencies
- Cobalamin metabolism defect complementation types C/D§‡
| - Methylenetetrahydrofolate reductase deficiency
- Cobalamin metabolism defect complementation type D combined†
- Cobalamin metabolism defect complementation types E/F/G/J/X‡
| | - Plasma amino acids
- Total homocysteine
| Next business day | |
Ornithine/asparagine (Orn/Asn) | MS/MS | N/A | N/A | - Ornithine aminotransferase deficiency
- Hyperornithinemia-hyperammonemia-homocitrullinuria syndrome
| N/A | - Plasma amino acids
- Urine amino acids
| Immediately | N/A |
Phenylalanine (Phe) | MS/MS | - Phenylketonuria (phenylalanine hydroxylase deficiency)
| - Mild phenylalanine hydroxylase deficiency
- GTP cyclohydrolase I and 6-pyruvoyl-tetrahydropterin synthase deficiencies
- Dihydropteridine reductase and pterin-4 alpha-carbinolamine dehydratase deficiencies
| - Untreated maternal phenylketonuria**
| | - Plasma amino acids
- Urine pterins
| Immediately | |
Succinylacetone (SUAC) | MS/MS | - Tyrosinemia type I (fumarylacetoacetase deficiency)
| N/A | N/A | N/A | - Plasma amino acids
- Urine organic acids
- Alpha fetoprotein
| Next business day | |
Tyrosine (Tyr) | MS/MS | - Tyrosinemia type I (fumarylacetoacetase deficiency)
| - Tyrosinemia type II (tyrosine aminotransferase deficiency)
- Tyrosinemia type III (4-hydroxyphenylpyruvate dioxygenase deficiency)
| N/A | | - Plasma amino acids
- Urine organic acids
| Next business day | |
Acylcarnitines |
Carnitine (C0), reduced | MS/MS | - Carnitine uptake defect (organic cation transporter 2 [OCTN2] deficiency)
| N/A | - Untreated maternal cases of carnitine uptake defect, glutaric acidemia type [glutaryl-CoA dehydrogenase deficiency], 3-methylcrotonyl-CoA carboxylase deficiency¶¶
| N/A | - Plasma total and free carnitine
- Plasma acylcarnitines
| Next business day | |
Carnitine (C0), elevated | MS/MS | N/A | - Carnitine palmitoyltransferase type I deficiency§
| N/A | N/A | - Plasma total and free carnitine
- Plasma acylcarnitines
| Immediately | |
Propionylcarnitine (C3) | MS/MS | - Propionic acidemia (propionyl-CoA carboxylase deficiency)§
- Multiple carboxylase deficiency (holocarboxylase deficiency)§
- Methylmalonyl-CoA mutase deficiency§
- Cobalamin metabolism defect complementation types A/B
| - Cobalamin metabolism defect complementation types C/D§
| - Cobalamin metabolism defect complementation type F
- Transcobalamin receptor defect
- Untreated maternal vitamin B12 defect
| - Methylmalonic acid
- Methylcitric acid
- Total homocysteine
| - Plasma total and free carnitine
- Plasma acylcarnitines
- Urine organic acids
| Immediately | |
Formiminoglutamic acid (FIGLU) | MS/MS | N/A | - Short-chain acyl-CoA dehydrogenase deficiency
- Isobutyryl-CoA dehydrogenase deficiency
| - Glutamate formiminotransferase deficiency (FIGLUuria)
| N/A | - Plasma acylcarnitines
- Urine organic acids
| Next business day | |
Butyryl-/isobutyrylcarnitine (C4) | MS/MS | N/A | - Short-chain acyl-CoA dehydrogenase deficiency
- Isobutyryl-CoA dehydrogenase deficiency
- Glutaric acidemia type II§
| - Ethylmalonic encephalopathy
- Glutamate formiminotransferase deficiency (FIGLUuria)
| | - Urine acylglycines
- Urine organic acids
- Plasma acylcarnitines
- Urine acylcarnitines
| Next business day | |
Tiglylcarnitine (C5:1) | MS/MS | - Beta-ketothiolase deficiency§
| - 2-methyl-3-hydroxybutyryl-CoA dehydrogenase deficiency (HSD10 disease)
| N/A | N/A | - Urine organic acids
- Plasma acylcarnitines
- Urine acylcarnitines
| Immediately | |
Isovaleryl-/2-methylbutyrylcarnitine (C5) | MS/MS | | - 2-methylbutyrylglycinuria
- Glutaric acidemia type II§
| - Ethylmalonic encephalopathy
| N/A | - Urine acylglycines
- Urine organic acids
- Plasma acylcarnitines
| Immediately | |
OH butyrylcarnitine (C4-OH) | MS/MS | N/A | - Short-/medium-chain acyl-CoA dehydrogenase deficiency
| N/A | N/A | - Urine organic acids
- Plasma acylcarnitines
| Next business day | |
Hexanoylcarnitine (C6) | MS/MS | - Medium-chain acyl-CoA dehydrogenase deficiency§
| - Glutaric acidemia type II§
| N/A | N/A | - Urine acylglycines
- Urine organic acids
- Plasma acylcarnitines
| Immediately | N/A |
OH isovalerylcarnitine (C5-OH) | MS/MS | - 3-methylcrotonyl-CoA carboxylase deficiency
- 3-hydroxy-3-methylglutaryl-coenzyme A lyase deficiency§
- Beta-ketothiolase deficiency§
- Multiple carboxylase deficiency (holocarboxylase deficiency)§
| - 2-methyl-3-hydroxybutyryl-CoA dehydrogenase deficiency (HSD10 disease)
- 3-methylglutaconic aciduria type I
| - MT-ATP6-related mitochondrial disease
- Biotinidase deficiency (partial)
| N/A | - Urine organic acids
- Plasma acylcarnitines
- Urine acylcarnitines
| Immediately | |
Octanoylcarnitine (C8) | MS/MS | - Medium-chain acyl-CoA dehydrogenase deficiency§
| - Glutaric acidemia type II§
- Medium-chain 3-ketoacyl-CoA thiolase deficiency
| N/A | N/A | - Urine acylglycines
- Urine organic acids
- Plasma acylcarnitines
| Immediately | |
Malonyl-/OH octanoylcarnitine (C3DC) | MS/MS | N/A | - Malonyl-CoA decarboxylase deficiency
- Medium-chain 3-ketoacyl-CoA thiolase deficiency
| N/A | N/A | - Urine organic acids
- Plasma acylcarnitines
| Immediately | |
Decadienoylcarnitine (C10:2) | MS/MS | N/A | - 2;4-Dienoyl-CoA reductase deficiency
| N/A | N/A | - Plasma acylcarnitines
- Plasma amino acids
| Next business day | N/A |
Decenoylcarnitine (C10:1) | MS/MS | - Medium-chain acyl-CoA dehydrogenase deficiency§
| - Glutaric acidemia type II§
| N/A | N/A | - Urine acylglycines
- Urine organic acids
- Plasma acylcarnitines
| Immediately | N/A |
Decanoylcarnitine (C10) | MS/MS | - Medium-chain acyl-CoA dehydrogenase deficiency§
| - Glutaric acidemia type II§
| N/A | N/A | - Urine acylglycines
- Urine organic acids
- Plasma acylcarnitines
| Immediately | N/A |
Succinyl-/methylmalonylcarnitine (C4DC) | MS/MS | - Methylmalonyl-CoA mutase deficiency§
- Cobalamin metabolism defect complementation types A/B
| N/A | - Succinyl-CoA synthase deficiency
| - Methylmalonic acid
- Total homocysteine
| - Urine organic acids
- Plasma acylcarnitines
| Next business day | N/A |
Glutaryl-/OH decanoylcarnitine (C5DC) | MS/MS | - Glutaric acidemia type I (glutaryl-CoA dehydrogenase deficiency)§
| - Glutaric acidemia type II§
| N/A | - Glutaric
- 3-hydroxyglutaric acid
- 2-hydroxyglutaric acid
| - Urine organic acids
- Plasma acylcarnitines
- Urine acylcarnitines
| Immediately | |
Dodecanoylcarnitine (C12) | MS/MS | - Very-long-chain acyl-CoA dehydrogenase deficiency§
| - Glutaric acidemia type II§
| N/A | N/A | - Plasma acylcarnitines
- Urine organic acids
- Molecular genetic analysis
| Immediately | N/A |
Methylglutarylcarnitine (C6DC) | MS/MS | - 3-hydroxy-3-methylglutaryl-coenzyme A lyase deficiency§
| N/A | N/A | N/A | - Urine organic acids
- Plasma acylcarnitines
- Urine acylcarnitines
| Immediately | N/A |
Tetradecanedioylcarnitine (C14:2) | MS/MS | - Very-long-chain acyl-CoA dehydrogenase deficiency§
- Long-chain 3-hydroxy acyl-CoA dehydrogenase deficiency/trifunctional protein deficiency§
| - Glutaric acidemia type II§
| N/A | N/A | - Plasma acylcarnitines
- Urine organic acids
- Molecular genetic analysis
| Immediately | N/A |
Tetradecenoylcarnitine (C14:1) | MS/MS | - Very-long-chain acyl-CoA dehydrogenase deficiency§
- Long-chain 3-hydroxy acyl-CoA dehydrogenase deficiency/trifunctional protein deficiency§
| - Glutaric acidemia type II§
| N/A | N/A | - Plasma acylcarnitines
- Urine organic acids
- Molecular genetic analysis
| Immediately | N/A |
Tetradecanoylcarnitine (C14) | MS/MS | - Very-long-chain acyl-CoA dehydrogenase deficiency§
- Long-chain 3-hydroxy acyl-CoA dehydrogenase deficiency/trifunctional protein deficiency§
| - Glutaric acidemia type II§
- Carnitine-acylcarnitine translocase deficiency§
- Carnitine palmitoyltransferase type II deficiency§
| N/A | N/A | - Plasma acylcarnitines
- Urine organic acids
- Molecular genetic analysis
| Immediately | N/A |
OH tetradecanoylcarnitine (C14-OH) | MS/MS | - Long-chain 3-hydroxy acyl-CoA dehydrogenase deficiency/trifunctional protein deficiency§
| - Glutaric acidemia type II§
| N/A | N/A | - Plasma total and free carnitine
- Plasma acylcarnitines
- Urine organic acids
| Immediately | N/A |
Palmitoleylcarnitine (C16:1) | MS/MS | - Very-long-chain acyl-CoA dehydrogenase deficiency§
- Long-chain 3-hydroxy acyl-CoA dehydrogenase deficiency/trifunctional protein deficiency§
| - Glutaric acidemia type II§
- Carnitine-acylcarnitine translocase deficiency§
- Carnitine palmitoyltransferase type II deficiency§
| N/A | N/A | - Plasma acylcarnitines
- Urine organic acids
- Molecular genetic analysis
| Immediately | N/A |
Palmitoylcarnitine (C16) | MS/MS | - Very-long-chain acyl-CoA dehydrogenase deficiency§
| - Glutaric acidemia type II§
- Carnitine-acylcarnitine translocase deficiency I§
- Carnitine palmitoyltransferase type II deficiency§
| N/A | N/A | - Plasma total and free carnitine
- Plasma acylcarnitines
- Urine organic acids
| Immediately | N/A |
OH hexadecenoylcarnitine (C16:1-OH) | MS/MS | - Long-chain 3-hydroxy acyl-CoA dehydrogenase deficiency/trifunctional protein deficiency§
| N/A | N/A | N/A | - Plasma total and free carnitine
- Plasma acylcarnitines
- Urine organic acids
| Immediately | N/A |
OH palmitoylcarnitine (C16-OH) | MS/MS | - Long-chain 3-hydroxy acyl-CoA dehydrogenase deficiency/trifunctional protein deficiency§
| - Glutaric acidemia type II§
| N/A | N/A | - Plasma total and free carnitine
- Plasma acylcarnitines
- Urine organic acids
| Immediately | N/A |
Oleylcarnitine (C18:1) | MS/MS | N/A | - Carnitine-acylcarnitine translocase deficiency§
- Carnitine palmitoyltransferase type II deficiency§
| N/A | N/A | - Plasma total and free carnitine
- Plasma acylcarnitines
- Urine organic acids
| Immediately | |
Stearylcarnitine (C18) | MS/MS | N/A | - Glutaric acidemia type II§
- Carnitine-acylcarnitine translocase deficiency§
- Carnitine palmitoyltransferase type II deficiency§
| N/A | N/A | - Plasma total and free carnitine
- Plasma acylcarnitines
- Urine organic acids
| Immediately | N/A |
OH oleylcarnitine (C18:1-OH) | MS/MS | - Long-chain 3-hydroxy acyl-CoA dehydrogenase deficiency/trifunctional protein deficiency§
| N/A | N/A | N/A | - Plasma total and free carnitine
- Plasma acylcarnitines
- Urine organic acids
| Immediately | N/A |
OH stearylcarnitine (C18-OH) | MS/MS | - Long-chain 3-hydroxy acyl-CoA dehydrogenase deficiency/trifunctional protein deficiency§
| N/A | N/A | N/A | - Plasma total and free carnitine
- Plasma acylcarnitines
- Urine organic acids
| Immediately | N/A |
Enzymes |
Biotinidase | Fluorometry | | N/A | N/A | N/A | | Next business day | |
Galactose-1-phoshate uridyltransferase (GALT) | Fluorometry | - Galactose-1-phosphate uridyltransferase deficiency§
| N/A | N/A | N/A | | Immediately | |
Acid alpha-glucosidase (GAA) | MS/MS or fluorometry | | N/A | N/A | | - GAA in WBCs
- Glucotetrasaccharides in urine
- Molecular genetic analysis
| Immediately | |
Galactocerebrosidase (GALC) | MS/MS or fluorometry | N/A | N/A | | - Psychosine (galactosylsphingosine)
| - GALC in WBCs
- Psychosine in RBCs
- Molecular genetic analysis
| ImmediatelyΔΔ | |
Alpha-iduronidase (IDUA) | MS/MS or fluorometry | | N/A | N/A | - Dermatan sulfate
- Heparan sulfate
| - IDUA in WBCs
- Glycosaminoglycans in blood or urine
- Molecular genetic analysis
| Next business day | |
Iduronate-2-sulfatase (IDS) | MS/MS or fluorometry | | N/A | - Multiple sulfatase deficiency
| - Dermatan sulfate
- Heparan sulfate
| - IDS in WBCs
- Glycosaminoglycans in blood or urine
- Molecular genetic analysis
| Next business day | |
Alpha-galactosidase A (GLA) | MS/MS or fluorometry | N/A | N/A | | N/A | - GLA in WBCs
- Molecular genetic analysis
| Next business day | |
Acid beta-glucosidase (GBA) | MS/MS or fluorometry | N/A | N/A | | - Glucopsychosine (glucosylsphingosine)
| - GBA in WBCs
- Glucopsychosine in blood
- Molecular genetic analysis
| Next business day | |
Acid sphingomyelinase (ASM) | MS/MS | N/A | N/A | - Niemann-Pick disease A, B
| | - ASM in WBCs
- Lysosphingomyelin in blood
- Molecular genetic analysis
| Next business day | |
Glucose-6-phosphate dehydrogenase (G6PD) | Fluorometry | N/A | N/A | - Glucose-6 phosphate dehydrogenase deficiency
| N/A | - G6PD in RBCs
- Molecular genetic analysis
| Immediately | N/A |
Other analytes |
Total galactose | Fluorometry | - Galactose-1-phosphate uridyltransferase deficiency§
| - Galactokinase (GALK) deficiency
- UDP-galactose-4-epimerase (GALE) deficiency
- Galactose mutarotase (GALM) deficiency
| N/A | N/A | - GALT in RBCs
- Galactose-1-phosphate in RBCs
- GALK/GALE in RBCs
| Immediately | |
Lysophosphatidylcholines (LPC) | MS/MS | - X-linked adrenoleukodystrophy
| N/A | - Zellweger spectrum disease
- Peroxisomal bifunctional protein
- Peroxisomal acyl-CoA oxidase (ACOX1) deficiency
| | - Plasma very-long-chain fatty acids
| Next business day | |
Guanidinoacetate (GUAC), creatine (Cr), creatinine (Crea) | MS/MS | N/A | N/A | - Guanidinoacetate methyltransferase deficiency
- Arginine:glycine amidinotransferase deficiency
- Cerebral creatine deficiency syndrome 1
| N/A | - GUAC
- Creatine
- Creatinine in plasma or urine
| Immediately | |